As to torps Quantums are best for HYT and TS but Photons have a better straight dps. So really depends on boffs.
Also I would definitely drop one of your EPS for a different console. Perhaps put your universal there and get another Field Generator for better tank. Also grats on the prototype shield.
On a slightly side note an Escort will deal more damage then most cruisers. This is mainly for two reasons. 1) All your damage is focused into a single arc making you very powerful in that arc and very weak in all the others. 2) The Escorts have more tactical boff slots which gives them access to more damage type boff abilities. That being said they are NOT better then Cruisers nor vice versa. Its just a different play style. I myself like cruisers because of the greatly increased tank over escorts.
Lidoki: Nice looking ship. However does it have the ability to target subsystems? If not I would drop the beam bank for another DHC or DC for the higher dps.
Not familiar with that ship though so the above may not be relevant. If that is the case please disregard.