http://sto.gamepedia.com/Shattering_Harmonics (I did clear my browser cache and checked again and it was still solid black)
Refractive Bulwark ground set is missing completely. It comes in Mk X through Mk XII http://sto.gamepedia.com/Refractive_Bulwark
Refracting Tetryon ship weapons are missing icons as well as the Hyper-Refractive dual beam bank set item. Sonic Antiproton ground weapons (from rep store) are missing icons. Mk XI and Mk XII for these items.
Armored Environmental Suits (from rep store) missing completely. Mk XI and Mk XII.
Consumable items missing:
Ground devices: Reprogrammed Tholian Drones, Advanced Reprogrammed Tholian Drones, and Elite reprogrammed Tholian Drones.
Nukara Web Breaker.